Cases Page

The Cases page includes all cases for all of your projects. Here, you can see a compact view of each case.

By default, the table is sorted by latest activity, showing the cases with the most recent updates at the top.

To access the Cases page, click the green "Cases" link in the top right corner of the page.

QC Dashboard

Cases Table Columns

Project

Lists the project(s) involved in the case, and their appropriate pipeline. Multiple projects will be involved in cases where relevant samples from the case's donor have been propagated to a different project.

Clicking on a project name will take you to the Project Details page.

Donor

Lists the case donor's internal and external names, and the tumour tissue origin, tissue type, and timepoint examined in the case.

Clicking on the donor name will take you to the Donor Details page.

Assay

Lists the case assay and requisition.

If the case is stopped, the text "CASE STOPPED" also appears here. Hovering over the text will display the stop reason in a tooltip. If the case is paused, similar text and tooltip are displayed in the same place.

Clicking on the requisition name will take you to the Requisition Details page.

Clicking on the "Case Details" link will take you to the Case Details page.

Start Date

Displays the case start date. Start date is the earliest receipt date of the receipt sample(s) involved in the case.

Test

Each assay includes one or more tests.

QC Steps

The following are QC step columns:

  • Receipt/Inspection
  • Extraction
  • Library Preparation
  • Library Qualification
  • Full-Depth Sequencing
  • Analysis Review
  • Release Approval
  • Release

Each QC step cell includes icons representing the QC status of each item relevant to that step. A checkmark represents an item that has passed QC. Click the Legend button at the top or bottom of the table for a full list of statuses and their icons. Analysis review, release approval, and release are considered complete when all sign-offs have been completed, regardless of the QC status chosen. Other steps require a single passing item to be considered complete. Hover over an icon to view a tooltip containing item details and relevant links.

A QC step cell is shaded yellow if the step has not been completed.

A QC step cell is shaded grey if it is not applicable for the test. For example, if stock samples were received, extraction is not necessary.

Latest Activity

Displays the latest date that an item involved in the case was created, modified, or signed-off.